A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv4039457



Internal ID19301596
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr18:29015591..29100945hg38UCSC Ensembl
Outerchr18:29012455..29106954hg38UCSC Ensembl
Innerchr18:26595555..26680909hg19UCSC Ensembl
Outerchr18:26592419..26686918hg19UCSC Ensembl
Cytoband18q12.1
Allele length
AssemblyAllele length
hg3894500
hg1994500
Variant TypeCNV deletion
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv1160512
Supporting Variants
Samples
Known Genes
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nssv4039457
Frequency
Sample Size369
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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