A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv4039447



Internal ID18954900
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr17:82415624..82523905hg38UCSC Ensembl
Outerchr17:82411695..82526070hg38UCSC Ensembl
Innerchr17:80373500..80481781hg19UCSC Ensembl
Outerchr17:80369571..80483946hg19UCSC Ensembl
Cytoband17q25.3
Allele length
AssemblyAllele length
hg38114376
hg19114376
Variant TypeCNV deletion
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv1160502
Supporting Variants
Samples
Known GenesC17orf62, FOXK2, HEXDC, NARF, OGFOD3
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nssv4039447
Frequency
Sample Size369
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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