A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv4039016



Internal ID19301155
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr17:14608126..14611092hg38UCSC Ensembl
Outerchr17:14603588..14614669hg38UCSC Ensembl
Innerchr17:14511443..14514409hg19UCSC Ensembl
Outerchr17:14506905..14517986hg19UCSC Ensembl
Cytoband17p12
Allele length
AssemblyAllele length
hg3811082
hg1911082
Variant TypeCNV deletion
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv1160450
Supporting Variants
Samples
Known Genes
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nssv4039016
Frequency
Sample Size369
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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