A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv4038490



Internal ID19300629
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr16:11526891..11552155hg38UCSC Ensembl
Outerchr16:11519313..11553636hg38UCSC Ensembl
Innerchr16:11620747..11646011hg19UCSC Ensembl
Outerchr16:11613169..11647492hg19UCSC Ensembl
Cytoband16p13.13
Allele length
AssemblyAllele length
hg3834324
hg1934324
Variant TypeCNV deletion
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv1160341
Supporting Variants
Samples
Known GenesLITAF
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nssv4038490
Frequency
Sample Size369
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer