A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv4038468



Internal ID19300607
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:101104523..101172058hg38UCSC Ensembl
Outerchr15:101098777..101175243hg38UCSC Ensembl
Innerchr15:101644728..101712263hg19UCSC Ensembl
Outerchr15:101638982..101715448hg19UCSC Ensembl
Cytoband15q26.3
Allele length
AssemblyAllele length
hg3876467
hg1976467
Variant TypeCNV duplication
Copy Number3
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv1160323
Supporting Variants
Samples
Known Genes
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nssv4038468
Frequency
Sample Size369
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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