A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv4038462



Internal ID19300601
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:89962617..89966887hg38UCSC Ensembl
Outerchr15:89959995..89971586hg38UCSC Ensembl
Innerchr15:90505849..90510119hg19UCSC Ensembl
Outerchr15:90503227..90514818hg19UCSC Ensembl
Cytoband15q26.1
Allele length
AssemblyAllele length
hg3811592
hg1911592
Variant TypeCNV deletion
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv1160318
Supporting Variants
Samples
Known Genes
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nssv4038462
Frequency
Sample Size369
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer