A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv4037940



Internal ID18953393
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:112978743..113058286hg38UCSC Ensembl
Outerchr9:112973631..113092071hg38UCSC Ensembl
Innerchr9:115741023..115820566hg19UCSC Ensembl
Outerchr9:115735911..115854351hg19UCSC Ensembl
Cytoband9q32
Allele length
AssemblyAllele length
hg38118441
hg19118441
Variant TypeCNV deletion
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv1161899
Supporting Variants
Samples
Known GenesZFP37, ZNF883
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nssv4037940
Frequency
Sample Size369
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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