A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv4037537



Internal ID19289636
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:39827488..39840169hg38UCSC Ensembl
Outerchr9:39807498..39878089hg38UCSC Ensembl
Innerchr9:41972506..41985187hg19UCSC Ensembl
Outerchr9:41952516..42023107hg19UCSC Ensembl
Cytoband9p12
Allele length
AssemblyAllele length
hg3870592
hg1970592
Variant TypeCNV deletion
Copy Number0
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv1161861
Supporting Variants
Samples
Known GenesKGFLP2, LOC643648, MGC21881
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nssv4037537
Frequency
Sample Size369
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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