A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv4037356



Internal ID19289455
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:15369880..15394349hg38UCSC Ensembl
Outerchr9:15368555..15403392hg38UCSC Ensembl
Innerchr9:15369878..15394347hg19UCSC Ensembl
Outerchr9:15368553..15403390hg19UCSC Ensembl
Cytoband9p22.3
Allele length
AssemblyAllele length
hg3834838
hg1934838
Variant TypeCNV duplication
Copy Number3
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv1161841
Supporting Variants
Samples
Known Genes
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nssv4037356
Frequency
Sample Size369
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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