A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv4035212



Internal ID19299075
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:166273363..166292812hg38UCSC Ensembl
Outerchr6:166272008..166297450hg38UCSC Ensembl
Innerchr6:166686851..166706300hg19UCSC Ensembl
Outerchr6:166685496..166710938hg19UCSC Ensembl
Cytoband6q27
Allele length
AssemblyAllele length
hg3825443
hg1925443
Variant TypeCNV deletion
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv1161470
Supporting Variants
Samples
Known Genes
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nssv4035212
Frequency
Sample Size369
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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