A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv4035109



Internal ID18952286
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:137928619..138007741hg38UCSC Ensembl
Outerchr6:137923842..138011142hg38UCSC Ensembl
Innerchr6:138249756..138328878hg19UCSC Ensembl
Outerchr6:138244979..138332279hg19UCSC Ensembl
Cytoband6q23.3
Allele length
AssemblyAllele length
hg3887301
hg1987301
Variant TypeCNV duplication
Copy Number3
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv1161453
Supporting Variants
Samples
Known Genes
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nssv4035109
Frequency
Sample Size369
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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