A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv4035054



Internal ID19298917
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:125161156..125181905hg38UCSC Ensembl
Outerchr6:125158657..125188313hg38UCSC Ensembl
Innerchr6:125482302..125503051hg19UCSC Ensembl
Outerchr6:125479803..125509459hg19UCSC Ensembl
Cytoband6q22.31
Allele length
AssemblyAllele length
hg3829657
hg1929657
Variant TypeCNV duplication
Copy Number3
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv1161450
Supporting Variants
Samples
Known GenesTPD52L1
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nssv4035054
Frequency
Sample Size369
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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