A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv4032654



Internal ID19296517
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr19:5502707..5510227hg38UCSC Ensembl
Outerchr19:5495929..5510427hg38UCSC Ensembl
Innerchr19:5502718..5510238hg19UCSC Ensembl
Outerchr19:5495940..5510438hg19UCSC Ensembl
Cytoband19p13.3
Allele length
AssemblyAllele length
hg3814499
hg1914499
Variant TypeCNV deletion
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv1160563
Supporting Variants
Samples
Known Genes
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nssv4032654
Frequency
Sample Size369
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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