A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv4032209



Internal ID18949386
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:30338762..30438914hg38UCSC Ensembl
Outerchr15:30334225..30439303hg38UCSC Ensembl
Innerchr15:30630965..30731117hg19UCSC Ensembl
Outerchr15:30626428..30731506hg19UCSC Ensembl
Cytoband15q13.2
Allele length
AssemblyAllele length
hg38105079
hg19105079
Variant TypeCNV duplication
Copy Number4
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv1160268
Supporting Variants
Samples
Known GenesCHRFAM7A, LOC101059918
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nssv4032209
Frequency
Sample Size369
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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