A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv4031200



Internal ID19295063
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:10994095..11019125hg38UCSC Ensembl
Outerchr12:10991920..11021118hg38UCSC Ensembl
Innerchr12:11146694..11171724hg19UCSC Ensembl
Outerchr12:11144519..11173717hg19UCSC Ensembl
Cytoband12p13.2
Allele length
AssemblyAllele length
hg3829199
hg1929199
Variant TypeCNV duplication
Copy Number3
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv1159978
Supporting Variants
Samples
Known GenesPRH1-PRR4, TAS2R20
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nssv4031200
Frequency
Sample Size369
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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