A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv4030449



Internal ID19294312
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr11:18927525..18937343hg38UCSC Ensembl
Outerchr11:18919323..18938477hg38UCSC Ensembl
Innerchr11:18949072..18958890hg19UCSC Ensembl
Outerchr11:18940870..18960024hg19UCSC Ensembl
Cytoband11p15.1
Allele length
AssemblyAllele length
hg3819155
hg1919155
Variant TypeCNV duplication
Copy Number3
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv1159835
Supporting Variants
Samples
Known GenesMRGPRX1
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nssv4030449
Frequency
Sample Size369
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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