A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv4030396



Internal ID19294259
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr11:5766850..5791130hg38UCSC Ensembl
Outerchr11:5766175..5794956hg38UCSC Ensembl
Innerchr11:5788080..5812360hg19UCSC Ensembl
Outerchr11:5787405..5816186hg19UCSC Ensembl
Cytoband11p15.4
Allele length
AssemblyAllele length
hg3828782
hg1928782
Variant TypeCNV deletion
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv1159823
Supporting Variants
Samples
Known GenesOR52N1, OR52N5
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nssv4030396
Frequency
Sample Size369
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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