A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv4029791



Internal ID19293654
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:145765754..145789052hg38UCSC Ensembl
Outerchr1:145763287..145790097hg38UCSC Ensembl
Innerchr1:145646029..145669308hg19UCSC Ensembl
Outerchr1:145644984..145671775hg19UCSC Ensembl
Cytoband1q21.1
Allele length
AssemblyAllele length
hg3826811
hg1926792
Variant TypeCNV duplication
Copy Number4
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv1161499
Supporting Variants
Samples
Known GenesLOC100288142, NBPF10, RNF115
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nssv4029791
Frequency
Sample Size369
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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