A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv4029328



Internal ID19293191
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr4:124723041..124725271hg38UCSC Ensembl
Outerchr4:124720173..124728393hg38UCSC Ensembl
Innerchr4:125644196..125646426hg19UCSC Ensembl
Outerchr4:125641328..125649548hg19UCSC Ensembl
Cytoband4q28.1
Allele length
AssemblyAllele length
hg388221
hg198221
Variant TypeCNV deletion
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv1161145
Supporting Variants
Samples
Known Genes
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nssv4029328
Frequency
Sample Size369
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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