A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv4027552



Internal ID18944729
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr2:232339649..232466924hg38UCSC Ensembl
Outerchr2:232328858..232470431hg38UCSC Ensembl
Innerchr2:233204359..233331634hg19UCSC Ensembl
Outerchr2:233193568..233335141hg19UCSC Ensembl
Cytoband2q37.1
Allele length
AssemblyAllele length
hg38141574
hg19141574
Variant TypeCNV duplication
Copy Number3
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv1160907
Supporting Variants
Samples
Known GenesALPI, ALPP, ALPPL2, DIS3L2, ECEL1P2
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nssv4027552
Frequency
Sample Size369
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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