A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv4026837



Internal ID19290700
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr2:56069050..56161078hg38UCSC Ensembl
Outerchr2:56060013..56166456hg38UCSC Ensembl
Innerchr2:56296185..56388213hg19UCSC Ensembl
Outerchr2:56287148..56393591hg19UCSC Ensembl
Cytoband2p16.1
Allele length
AssemblyAllele length
hg38106444
hg19106444
Variant TypeCNV duplication
Copy Number4
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv1160803
Supporting Variants
Samples
Known Genes
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nssv4026837
Frequency
Sample Size369
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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