A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv4026345



Internal ID19290208
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:245270959..245279235hg38UCSC Ensembl
Outerchr1:245263357..245282597hg38UCSC Ensembl
Innerchr1:245434261..245442537hg19UCSC Ensembl
Outerchr1:245426659..245445899hg19UCSC Ensembl
Cytoband1q44
Allele length
AssemblyAllele length
hg3819241
hg1919241
Variant TypeCNV deletion
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv1160480
Supporting Variants
Samples
Known GenesKIF26B
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nssv4026345
Frequency
Sample Size369
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer