A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv4026014



Internal ID18943191
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:193206637..193344586hg38UCSC Ensembl
Outerchr1:193194613..193349587hg38UCSC Ensembl
Innerchr1:193175767..193313716hg19UCSC Ensembl
Outerchr1:193163743..193318717hg19UCSC Ensembl
Cytoband1q31.2
Allele length
AssemblyAllele length
hg38154975
hg19154975
Variant TypeCNV duplication
Copy Number3
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv1159811
Supporting Variants
Samples
Known GenesCDC73
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nssv4026014
Frequency
Sample Size369
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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