A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv3967400



Internal ID18880334
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr6:31455323..33480423hg38UCSC Ensembl
Outerchr6:31423100..33448200hg19UCSC Ensembl
Cytoband6p21.32
Allele length
AssemblyAllele length
hg382025101
hg192025101
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv1112900
Supporting Variants
SamplesKWS2
Known GenesABHD16A, AGER, AGPAT1, AIF1, APOM, ATF6B, ATP6V1G2, ATP6V1G2-DDX39B, B3GALT4, BAG6, BRD2, BTNL2, C2, C4A, C4B, C4B_2, C6orf10, C6orf25, C6orf47, C6orf48, CFB, CLIC1, COL11A2, CSNK2B, CUTA, CYP21A1P, CYP21A2, DAXX, DDAH2, DDX39B, DXO, EGFL8, EHMT2, FKBPL, GPANK1, GPSM3, HCG23, HCG25, HCG26, HCP5, HLA-DMA, HLA-DMB, HLA-DOA, HLA-DOB, HLA-DPA1, HLA-DPB1, HLA-DPB2, HLA-DQA1, HLA-DQA2, HLA-DQB1, HLA-DQB2, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6, HSD17B8, HSPA1A, HSPA1B, HSPA1L, KIFC1, LOC100294145, LOC100507547, LOC102060414, LSM2, LST1, LTA, LTB, LY6G5B, LY6G5C, LY6G6C, LY6G6D, LY6G6E, LY6G6F, MCCD1, MICB, MIR1236, MIR219-1, MIR4646, MIR5004, MIR6721, MIR6832, MIR6833, MIR6834, MIR6873, MSH5, MSH5-SAPCD1, NCR3, NELFE, NEU1, NFKBIL1, NOTCH4, PBX2, PFDN6, PHF1, PPT2, PPT2-EGFL8, PRRC2A, PRRT1, PSMB8, PSMB9, RGL2, RING1, RNF5, RNF5P1, RPS18, RXRB, SAPCD1, SKIV2L, SLC39A7, SLC44A4, SNORA38, SNORD117, SNORD48, SNORD52, SNORD84, STK19, SYNGAP1, TAP1, TAP2, TAPBP, TAPSAR1, TNF, TNXA, TNXB, VARS, VPS52, VWA7, WDR46, ZBTB12, ZBTB22, ZBTB9
MethodSequencing
AnalysisHugeSeq
PlatformIllumina HiSeq 2000
Comments
ReferenceAlsmadi_et_al_2014
Pubmed ID24896259
Accession Number(s)nssv3967400
Frequency
Sample Size2
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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