A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv25973



Internal ID15481646
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr22:38963148..38989469hg38UCSC Ensembl
Outerchr22:38962558..38989937hg38UCSC Ensembl
Innerchr22:39359153..39385474hg19UCSC Ensembl
Outerchr22:39358563..39385942hg19UCSC Ensembl
Innerchr22:37689099..37715420hg18UCSC Ensembl
Outerchr22:37688509..37715888hg18UCSC Ensembl
Innerchr22:37683653..37709974hg17UCSC Ensembl
Outerchr22:37683063..37710442hg17UCSC Ensembl
Cytoband22q13.1
Allele length
AssemblyAllele length
hg3827380
hg1927380
hg1827380
hg1727380
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv9907
Supporting Variants
SamplesNA10839
Known GenesAPOBEC3A, APOBEC3A_B, APOBEC3B
MethodOligo aCGH
AnalysisStatistical threshold = 5.0, minimum +/- log2 ratio = 0.25 and minimum number of probes = 2
PlatformAgilent-015686 Custom Human 244K CGH Microarray
Comments
ReferencePerry_et_al_2008
Pubmed ID18304495
Accession Number(s)nssv25973
Frequency
Sample Size31
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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