A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv25673



Internal ID15497003
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:11028941..11097742hg38UCSC Ensembl
Outerchr12:11027975..11098551hg38UCSC Ensembl
Innerchr12:11181540..11250341hg19UCSC Ensembl
Outerchr12:11180574..11251150hg19UCSC Ensembl
Innerchr12:11072807..11141608hg18UCSC Ensembl
Outerchr12:11071841..11142417hg18UCSC Ensembl
Innerchr12:11072807..11141608hg17UCSC Ensembl
Outerchr12:11071841..11142417hg17UCSC Ensembl
Cytoband12p13.2
Allele length
AssemblyAllele length
hg3870577
hg1970577
hg1870577
hg1770577
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv8917
Supporting Variants
SamplesNA19221
Known GenesPRH1-PRR4, TAS2R31, TAS2R43, TAS2R46
MethodOligo aCGH
AnalysisStatistical threshold = 5.0, minimum +/- log2 ratio = 0.25 and minimum number of probes = 2
PlatformAgilent-015686 Custom Human 244K CGH Microarray
Comments
ReferencePerry_et_al_2008
Pubmed ID18304495
Accession Number(s)nssv25673
Frequency
Sample Size31
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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