A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv25533



Internal ID15495381
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:30093127..30667075hg38UCSC Ensembl
Outerchr15:30092641..30668621hg38UCSC Ensembl
Innerchr15:30385330..30959278hg19UCSC Ensembl
Outerchr15:30384844..30960824hg19UCSC Ensembl
Innerchr15:28172622..28746570hg18UCSC Ensembl
Outerchr15:28172136..28748116hg18UCSC Ensembl
Innerchr15:28172622..28746570hg17UCSC Ensembl
Outerchr15:28172136..28748116hg17UCSC Ensembl
Cytoband15q13.2
Allele length
AssemblyAllele length
hg38575981
hg19575981
hg18575981
hg17575981
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv9232
Supporting Variants
SamplesNA19132
Known GenesARHGAP11B, CHRFAM7A, DKFZP434L187, GOLGA8H, GOLGA8J, GOLGA8T, LOC100288637, LOC101059918, ULK4P1, ULK4P2, ULK4P3
MethodOligo aCGH
AnalysisStatistical threshold = 5.0, minimum +/- log2 ratio = 0.25 and minimum number of probes = 2
PlatformAgilent-015686 Custom Human 244K CGH Microarray
Comments
ReferencePerry_et_al_2008
Pubmed ID18304495
Accession Number(s)nssv25533
Frequency
Sample Size31
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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