A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv23258



Internal ID15481793
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr16:33286489..33385357hg38UCSC Ensembl
Outerchr16:33286383..33385695hg38UCSC Ensembl
Innerchr16:33187730..33286598hg19UCSC Ensembl
Outerchr16:33187624..33286936hg19UCSC Ensembl
Innerchr16:33095231..33194099hg18UCSC Ensembl
Outerchr16:33095125..33194437hg18UCSC Ensembl
Innerchr16:33095231..33194099hg17UCSC Ensembl
Outerchr16:33095125..33194437hg17UCSC Ensembl
Cytoband16p11.2
Allele length
AssemblyAllele length
hg3899313
hg1999313
hg1899313
hg1799313
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv9439
Supporting Variants
SamplesNA10839
Known GenesTP53TG3, TP53TG3B, TP53TG3C
MethodOligo aCGH
AnalysisStatistical threshold = 5.0, minimum +/- log2 ratio = 0.25 and minimum number of probes = 2
PlatformAgilent-015686 Custom Human 244K CGH Microarray
Comments
ReferencePerry_et_al_2008
Pubmed ID18304495
Accession Number(s)nssv23258
Frequency
Sample Size31
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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