A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv23174



Internal ID15481891
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr16:32651571..32693986hg38UCSC Ensembl
Outerchr16:32651316..32694092hg38UCSC Ensembl
Innerchr16:32662892..32705307hg19UCSC Ensembl
Outerchr16:32662637..32705413hg19UCSC Ensembl
Innerchr16:32570393..32612808hg18UCSC Ensembl
Outerchr16:32570138..32612914hg18UCSC Ensembl
Innerchr16:32570393..32612808hg17UCSC Ensembl
Outerchr16:32570138..32612914hg17UCSC Ensembl
Cytoband16p11.2
Allele length
AssemblyAllele length
hg3842777
hg1942777
hg1842777
hg1742777
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv9439
Supporting Variants
SamplesNA10839
Known GenesTP53TG3, TP53TG3B, TP53TG3C
MethodOligo aCGH
AnalysisStatistical threshold = 5.0, minimum +/- log2 ratio = 0.25 and minimum number of probes = 2
PlatformAgilent-015686 Custom Human 244K CGH Microarray
Comments
ReferencePerry_et_al_2008
Pubmed ID18304495
Accession Number(s)nssv23174
Frequency
Sample Size31
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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