A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv22013



Internal ID15839536
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:46828769..47703501hg19UCSC Ensembl
Outerchr10:46828298..47703901hg19UCSC Ensembl
Innerchr10:46248775..47173507hg18UCSC Ensembl
Outerchr10:46248304..47173907hg18UCSC Ensembl
Innerchr10:46248775..47173507hg17UCSC Ensembl
Outerchr10:46248304..47173907hg17UCSC Ensembl
Cytoband10q11.22
Allele length
AssemblyAllele length
hg19875604
hg18925604
hg17925604
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv8636
Supporting Variants
SamplesNA18972
Known GenesAGAP9, ANTXRL, ANTXRLP1, ANXA8, BMS1P2, BMS1P6, FAM25C, FAM25G, FAM35BP, FAM35DP, GPRIN2, HNRNPA1P33, LINC00842, LOC100996758, NPY4R, SYT15
MethodOligo aCGH
AnalysisStatistical threshold = 5.0, minimum +/- log2 ratio = 0.25 and minimum number of probes = 2
PlatformAgilent-015686 Custom Human 244K CGH Microarray
Comments
ReferencePerry_et_al_2008
Pubmed ID18304495
Accession Number(s)nssv22013
Frequency
Sample Size31
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer