A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv21644



Internal ID15834297
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:46678191..48355506hg19UCSC Ensembl
Outerchr10:46677594..48355813hg19UCSC Ensembl
Innerchr10:46098197..47975512hg18UCSC Ensembl
Outerchr10:46097600..47975819hg18UCSC Ensembl
Innerchr10:46098197..47975512hg17UCSC Ensembl
Outerchr10:46097600..47975819hg17UCSC Ensembl
Cytoband10q11.21
Allele length
AssemblyAllele length
hg191678220
hg181878220
hg171878220
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv8636
Supporting Variants
SamplesNA18517
Known GenesAGAP9, ANTXRL, ANTXRLP1, ANXA8, ANXA8L1, ANXA8L2, BMS1P1, BMS1P2, BMS1P5, BMS1P6, CTSLP2, FAM21B, FAM25B, FAM25C, FAM25G, FAM35BP, FAM35DP, GLUD1P7, GPRIN2, HNRNPA1P33, LINC00842, LOC100996758, NPY4R, SYT15, ZNF488
MethodOligo aCGH
AnalysisStatistical threshold = 5.0, minimum +/- log2 ratio = 0.25 and minimum number of probes = 2
PlatformAgilent-015686 Custom Human 244K CGH Microarray
Comments
ReferencePerry_et_al_2008
Pubmed ID18304495
Accession Number(s)nssv21644
Frequency
Sample Size31
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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