A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv20440



Internal ID15485241
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr16:33283946..33387137hg38UCSC Ensembl
Outerchr16:33282279..33387481hg38UCSC Ensembl
Innerchr16:33185187..33288378hg19UCSC Ensembl
Outerchr16:33183520..33288722hg19UCSC Ensembl
Innerchr16:33092688..33195879hg18UCSC Ensembl
Outerchr16:33091021..33196223hg18UCSC Ensembl
Innerchr16:33092688..33195879hg17UCSC Ensembl
Outerchr16:33091021..33196223hg17UCSC Ensembl
Cytoband16p11.2
Allele length
AssemblyAllele length
hg38105203
hg19105203
hg18105203
hg17105203
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv9439
Supporting Variants
SamplesNA12802
Known GenesTP53TG3, TP53TG3B, TP53TG3C
MethodOligo aCGH
AnalysisStatistical threshold = 5.0, minimum +/- log2 ratio = 0.25 and minimum number of probes = 2
PlatformAgilent-015686 Custom Human 244K CGH Microarray
Comments
ReferencePerry_et_al_2008
Pubmed ID18304495
Accession Number(s)nssv20440
Frequency
Sample Size31
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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