A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv19307



Internal ID15835945
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:46678593..47775083hg19UCSC Ensembl
Outerchr10:46678196..47776049hg19UCSC Ensembl
Innerchr10:46098599..47245089hg18UCSC Ensembl
Outerchr10:46098202..47246055hg18UCSC Ensembl
Innerchr10:46098599..47245089hg17UCSC Ensembl
Outerchr10:46098202..47246055hg17UCSC Ensembl
Cytoband10q11.21
Allele length
AssemblyAllele length
hg191097854
hg181147854
hg171147854
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv8636
Supporting Variants
SamplesNA18563
Known GenesAGAP9, ANTXRL, ANTXRLP1, ANXA8, ANXA8L1, ANXA8L2, BMS1P1, BMS1P2, BMS1P5, BMS1P6, FAM25B, FAM25C, FAM25G, FAM35BP, FAM35DP, GLUD1P7, GPRIN2, HNRNPA1P33, LINC00842, LOC100996758, NPY4R, SYT15
MethodOligo aCGH
AnalysisStatistical threshold = 5.0, minimum +/- log2 ratio = 0.25 and minimum number of probes = 2
PlatformAgilent-015686 Custom Human 244K CGH Microarray
Comments
ReferencePerry_et_al_2008
Pubmed ID18304495
Accession Number(s)nssv19307
Frequency
Sample Size31
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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