A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv19289



Internal ID15843159
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:46808484..47705277hg19UCSC Ensembl
Outerchr10:46808139..47707473hg19UCSC Ensembl
Innerchr10:46228490..47175283hg18UCSC Ensembl
Outerchr10:46228145..47177479hg18UCSC Ensembl
Innerchr10:46228490..47175283hg17UCSC Ensembl
Outerchr10:46228145..47177479hg17UCSC Ensembl
Cytoband10q11.22
Allele length
AssemblyAllele length
hg19899335
hg18949335
hg17949335
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv8636
Supporting Variants
SamplesNA19173
Known GenesAGAP9, ANTXRL, ANTXRLP1, ANXA8, BMS1P2, BMS1P6, FAM25C, FAM25G, FAM35BP, FAM35DP, GPRIN2, HNRNPA1P33, LINC00842, LOC100996758, NPY4R, SYT15
MethodOligo aCGH
AnalysisStatistical threshold = 5.0, minimum +/- log2 ratio = 0.25 and minimum number of probes = 2
PlatformAgilent-015686 Custom Human 244K CGH Microarray
Comments
ReferencePerry_et_al_2008
Pubmed ID18304495
Accession Number(s)nssv19289
Frequency
Sample Size31
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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