A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv18040



Internal ID15485153
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr11:55600408..55685516hg38UCSC Ensembl
Outerchr11:55599690..55691707hg38UCSC Ensembl
Innerchr11:55367884..55452992hg19UCSC Ensembl
Outerchr11:55367166..55459183hg19UCSC Ensembl
Innerchr11:55124460..55209568hg18UCSC Ensembl
Outerchr11:55123742..55215759hg18UCSC Ensembl
Innerchr11:55124460..55209568hg17UCSC Ensembl
Outerchr11:55123742..55215759hg17UCSC Ensembl
Cytoband11q11
Allele length
AssemblyAllele length
hg3892018
hg1992018
hg1892018
hg1792018
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv8827
Supporting Variants
SamplesNA12802
Known GenesOR4C11, OR4C6, OR4P4, OR4S2
MethodOligo aCGH
AnalysisStatistical threshold = 5.0, minimum +/- log2 ratio = 0.25 and minimum number of probes = 2
PlatformAgilent-015686 Custom Human 244K CGH Microarray
Comments
ReferencePerry_et_al_2008
Pubmed ID18304495
Accession Number(s)nssv18040
Frequency
Sample Size31
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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