A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv17904



Internal ID15840306
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:46332711..46783703hg38UCSC Ensembl
Outerchr10:46332711..46785270hg38UCSC Ensembl
Innerchr10:46765922..47255048hg19UCSC Ensembl
Outerchr10:46764355..47255093hg19UCSC Ensembl
Innerchr10:46185928..46675054hg18UCSC Ensembl
Outerchr10:46184361..46675099hg18UCSC Ensembl
Innerchr10:46185928..46675054hg17UCSC Ensembl
Outerchr10:46184361..46675099hg17UCSC Ensembl
Cytoband10q11.22
Allele length
AssemblyAllele length
hg38452560
hg19490739
hg18490739
hg17490739
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv8636
Supporting Variants
SamplesNA18975
Known GenesAGAP9, ANXA8, BMS1P2, BMS1P6, FAM25C, FAM25G, FAM35BP, GLUD1P7, GPRIN2, HNRNPA1P33, LINC00842, LOC100996758, NPY4R, SYT15
MethodOligo aCGH
AnalysisStatistical threshold = 5.0, minimum +/- log2 ratio = 0.25 and minimum number of probes = 2
PlatformAgilent-015686 Custom Human 244K CGH Microarray
Comments
ReferencePerry_et_al_2008
Pubmed ID18304495
Accession Number(s)nssv17904
Frequency
Sample Size31
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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