A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv17736705



Internal ID160371
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:45310830..84506186hg38UCSC Ensembl
chrX:45170075..83761194hg19UCSC Ensembl
CytobandXp11.1
Allele length
AssemblyAllele length
hg3839195357
hg1938591120
Variant TypeOTHER sequence alteration
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv5562478
Supporting Variants
Samples
Known GenesABCB7, ACRC, AKAP4, ALAS2, AMER1, APEX2, AR, ARAF, ARHGEF9, ARR3, ASB12, ATP7A, ATRX, AWAT1, AWAT2, BCYRN1, BMP15, BRWD3, CACNA1F, CCDC120, CCDC22, CCNB3, CDK16, CDX4, CENPVP1, CENPVP2, CFP, CHIC1, CHST7, CITED1, CLCN5, COX7B, CXCR3, CXorf31, CXorf49, CXorf49B, CXorf65, CXXC1P1, CYLC1, CYSLTR1, DGAT2L6, DGKK, DLG3, DMRTC1, DMRTC1B, EBP, EDA, EDA2R, EFNB1, ELK1, ERAS, ERCC6L, FAAH2, FAM104B, FAM120C, FAM155B, FAM156A, FAM156B, FAM226A, FAM226B, FAM46D, FGD1, FGF16, FLJ44635, FOXO4, FOXP3, FOXR2, FRMD8P1, FTSJ1, FTX, GAGE1, GAGE10, GAGE12B, GAGE12C, GAGE12D, GAGE12E, GAGE12F, GAGE12G, GAGE12H, GAGE12I, GAGE12J, GAGE13, GAGE2A, GAGE2B, GAGE2C, GAGE2D, GAGE2E, GAGE4, GAGE5, GAGE6, GAGE7, GAGE8, GATA1, GDPD2, GJB1, GLOD5, GNL3L, GPKOW, GPR173, GPR174, GRIPAP1, GSPT2, HDAC6, HDAC8, HDX, HEPH, HMGN5, HSD17B10, HUWE1, IGBP1, IL2RG, INE1, INGX, IQSEC2, ITGB1BP2, ITIH6, ITM2A, JADE3, JPX, KCND1, KDM5C, KIAA2022, KIF4A, KLF8, KRBOX4, LAS1L, LINC00269, LINC00684, LINC00891, LOC100132741, LOC101927528, LOC392452, LOC550643, LOC92249, LPAR4, MAGED1, MAGED2, MAGED4, MAGED4B, MAGEE1, MAGEE2, MAGEH1, MAGIX, MAGT1, MAP2K4P1, MED12, MIR1468, MIR188, MIR221, MIR222, MIR223, MIR362, MIR374A, MIR374B, MIR374C, MIR384, MIR421, MIR4328, MIR4536-1, MIR4769, MIR500A, MIR500B, MIR501, MIR502, MIR532, MIR545, MIR660, MIR676, MIR6857, MIR6894, MIR6895, MIR8088, MIR98, MIRLET7F2, MSN, MTMR8, MTRNR2L10, NAP1L2, NAP1L6, NDUFB11, NHSL2, NLGN3, NONO, NUDT10, NUDT11, OGT, OPHN1, OTUD5, OTUD6A, P2RY10, P2RY4, PABPC1L2A, PABPC1L2B, PAGE1, PAGE2, PAGE2B, PAGE3, PAGE4, PAGE5, PBDC1, PCSK1N, PDZD11, PFKFB1, PGAM4, PGK1, PHF8, PHKA1, PIM2, PIN4, PJA1, PLP2, PORCN, POU3F4, PPP1R3F, PQBP1, PRAF2, PRICKLE3, RAB41, RBM10, RBM3, RGAG4, RGN, RIBC1, RLIM, RP2, RPS26P11, RPS4X, RPS6KA6, RRAGB, SH3BGRL, SHROOM4, SLC16A2, SLC35A2, SLC38A5, SLC7A3, SLC9A7, SMC1A, SNORA11, SNORA11C, SNORA11D, SNORA11E, SNX12, SPACA5, SPACA5B, SPANXN5, SPIN2A, SPIN2B, SPIN3, SPIN4, SSX1, SSX2, SSX2B, SSX3, SSX4, SSX4B, SSX5, SSX6, SSX7, SSX8, SSX9, STARD8, SUV39H1, SYN1, SYP, TAF1, TAF9B, TBC1D25, TBX22, TEX11, TFE3, TIMM17B, TIMP1, TRO, TSIX, TSPYL2, TSR2, TTC3P1, UBA1, UBQLN2, UPRT, UQCRBP1, USP11, USP27X, USP27X-AS1, USP51, UXT, UXT-AS1, VSIG4, WAS, WDR13, WDR45, WNK3, XAGE1A, XAGE1B, XAGE1C, XAGE1D, XAGE1E, XAGE2, XAGE2B, XAGE3, XAGE5, XIST, YIPF6, ZC3H12B, ZC4H2, ZCCHC13, ZCCHC5, ZDHHC15, ZMYM3, ZNF157, ZNF182, ZNF41, ZNF630, ZNF674, ZNF674-AS1, ZNF81, ZXDA, ZXDB
MethodSequencing
Analysis
Platform
Commentscomplex variant
ReferenceByrska_Bishop_et_al_2022
Pubmed ID36055201
Accession Number(s)nssv17736705
Frequency
Sample Size3202
Observed Gain0
Observed Loss0
Observed Complex0
Frequency0.000156


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