A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv16964



Internal ID15834046
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:32658389..32659230hg38UCSC Ensembl
Outerchr6:32657037..32659963hg38UCSC Ensembl
Innerchr6:32626166..32627007hg19UCSC Ensembl
Outerchr6:32624814..32627740hg19UCSC Ensembl
Innerchr6:32734144..32734985hg18UCSC Ensembl
Outerchr6:32732792..32735718hg18UCSC Ensembl
Innerchr6:32734144..32734985hg17UCSC Ensembl
Outerchr6:32732792..32735718hg17UCSC Ensembl
Cytoband6p21.32
Allele length
AssemblyAllele length
hg382927
hg192927
hg182927
hg172927
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv7883
Supporting Variants
SamplesNA18517
Known GenesHLA-DQB1
MethodOligo aCGH
AnalysisStatistical threshold = 5.0, minimum +/- log2 ratio = 0.25 and minimum number of probes = 2
PlatformAgilent-015686 Custom Human 244K CGH Microarray
Comments
ReferencePerry_et_al_2008
Pubmed ID18304495
Accession Number(s)nssv16964
Frequency
Sample Size31
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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