A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv16841



Internal ID15832376
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:46810300..47703501hg19UCSC Ensembl
Outerchr10:46810237..47703901hg19UCSC Ensembl
Innerchr10:46230306..47173507hg18UCSC Ensembl
Outerchr10:46230243..47173907hg18UCSC Ensembl
Innerchr10:46230306..47173507hg17UCSC Ensembl
Outerchr10:46230243..47173907hg17UCSC Ensembl
Cytoband10q11.22
Allele length
AssemblyAllele length
hg19893665
hg18943665
hg17943665
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv8636
Supporting Variants
SamplesNA12872
Known GenesAGAP9, ANTXRL, ANTXRLP1, ANXA8, BMS1P2, BMS1P6, FAM25C, FAM25G, FAM35BP, FAM35DP, GPRIN2, HNRNPA1P33, LINC00842, LOC100996758, NPY4R, SYT15
MethodOligo aCGH
AnalysisStatistical threshold = 5.0, minimum +/- log2 ratio = 0.25 and minimum number of probes = 2
PlatformAgilent-015686 Custom Human 244K CGH Microarray
Comments
ReferencePerry_et_al_2008
Pubmed ID18304495
Accession Number(s)nssv16841
Frequency
Sample Size31
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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