A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv1672357



Internal ID15529865
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr5:180783102..180976232hg38UCSC Ensembl
Innerchr5:180210102..180403232hg19UCSC Ensembl
Innerchr5:180142708..180335838hg18UCSC Ensembl
Innerchr5:180319764..180512894hg16UCSC Ensembl
Cytoband5q35.3
Allele length
AssemblyAllele length
hg38193131
hg19193131
hg18193131
hg16193131
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv469788
Supporting Variants
Samples
Known GenesBTNL8, HEIH, LINC00847, MGAT1, ZFP62
MethodBAC aCGH
AnalysisA locus was considered a CNV if the log ratio of fluorescence measurements for the individuals assayed exceeded twice the SD of the autosomal clones in both dye-swapped experiments.
PlatformGPL4010
Comments
ReferenceLocke_et_al_2006
Pubmed ID16826518
Accession Number(s)nssv1672357
Frequency
Sample Size265
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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