A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv1659936



Internal ID15488478
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:42129217..42141608hg38UCSC Ensembl
Innerchr15:42421415..42433806hg19UCSC Ensembl
Innerchr15:40208707..40221098hg18UCSC Ensembl
Innerchr15:40208707..40221098hg17UCSC Ensembl
Cytoband15q15.1
Allele length
AssemblyAllele length
hg3812392
hg1912392
hg1812392
hg1712392
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv442371
Supporting Variants
SamplesNA18991
Known GenesPLA2G4F
MethodSNP array
AnalysisWe used two computational approaches to identify CNVs: the hidden Markov model Birdseye, and an approach based on correlation between nearby probes across a population sample. To maximize the quality of reported findings, we ran duplicate experiments in independent labs, and report the CNVs that were observed in both experiments, in the same samples and at essentially identical genomic locations.
Platform[GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
Comments
ReferenceMcCarroll_et_al_2008
Pubmed ID18776908
Accession Number(s)nssv1659936
Frequency
Sample Size270
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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