A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv1657837



Internal ID15122801
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr5:68560..115996hg38UCSC Ensembl
Innerchr5:68675..116111hg19UCSC Ensembl
Innerchr5:121675..169111hg18UCSC Ensembl
Innerchr5:121675..169111hg17UCSC Ensembl
Cytoband5p15.33
Allele length
AssemblyAllele length
hg3847437
hg1947437
hg1847437
hg1747437
Variant TypeCNV gain
Copy Number3
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv441935
Supporting Variants
SamplesNA12872
Known Genes
MethodSNP array
AnalysisWe used two computational approaches to identify CNVs: the hidden Markov model Birdseye, and an approach based on correlation between nearby probes across a population sample. To maximize the quality of reported findings, we ran duplicate experiments in independent labs, and report the CNVs that were observed in both experiments, in the same samples and at essentially identical genomic locations.
Platform[GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
Comments
ReferenceMcCarroll_et_al_2008
Pubmed ID18776908
Accession Number(s)nssv1657837
Frequency
Sample Size270
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer