A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv1657216



Internal ID15499313
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr3:993313..997505hg38UCSC Ensembl
Innerchr3:1034997..1039189hg19UCSC Ensembl
Innerchr3:1009997..1014189hg18UCSC Ensembl
Innerchr3:1009997..1014189hg17UCSC Ensembl
Cytoband3p26.3
Allele length
AssemblyAllele length
hg384193
hg194193
hg184193
hg174193
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv441807
Supporting Variants
SamplesNA19221
Known Genes
MethodSNP array
AnalysisWe used two computational approaches to identify CNVs: the hidden Markov model Birdseye, and an approach based on correlation between nearby probes across a population sample. To maximize the quality of reported findings, we ran duplicate experiments in independent labs, and report the CNVs that were observed in both experiments, in the same samples and at essentially identical genomic locations.
Platform[GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
Comments
ReferenceMcCarroll_et_al_2008
Pubmed ID18776908
Accession Number(s)nssv1657216
Frequency
Sample Size270
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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