A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv1656690



Internal ID15498293
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:92113687..92118958hg38UCSC Ensembl
Innerchr1:92579244..92584515hg19UCSC Ensembl
Innerchr1:92351832..92357103hg18UCSC Ensembl
Innerchr1:92291265..92296536hg17UCSC Ensembl
Cytoband1p22.1
Allele length
AssemblyAllele length
hg385272
hg195272
hg185272
hg175272
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv441700
Supporting Variants
SamplesNA19206
Known GenesBTBD8
MethodSNP array
AnalysisWe used two computational approaches to identify CNVs: the hidden Markov model Birdseye, and an approach based on correlation between nearby probes across a population sample. To maximize the quality of reported findings, we ran duplicate experiments in independent labs, and report the CNVs that were observed in both experiments, in the same samples and at essentially identical genomic locations.
Platform[GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
Comments
ReferenceMcCarroll_et_al_2008
Pubmed ID18776908
Accession Number(s)nssv1656690
Frequency
Sample Size270
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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