A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv1656684



Internal ID15131963
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:85445608..85449719hg38UCSC Ensembl
Innerchr1:85911291..85915402hg19UCSC Ensembl
Innerchr1:85683879..85687990hg18UCSC Ensembl
Innerchr1:85623312..85627423hg17UCSC Ensembl
Cytoband1p22.3
Allele length
AssemblyAllele length
hg384112
hg194112
hg184112
hg174112
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv441699
Supporting Variants
SamplesNA18620
Known GenesDDAH1
MethodSNP array
AnalysisWe used two computational approaches to identify CNVs: the hidden Markov model Birdseye, and an approach based on correlation between nearby probes across a population sample. To maximize the quality of reported findings, we ran duplicate experiments in independent labs, and report the CNVs that were observed in both experiments, in the same samples and at essentially identical genomic locations.
Platform[GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
Comments
ReferenceMcCarroll_et_al_2008
Pubmed ID18776908
Accession Number(s)nssv1656684
Frequency
Sample Size270
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer