A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv16090159



Internal ID19815429
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:161493524..166518260hg38UCSC Ensembl
chr1:161463314..166487497hg19UCSC Ensembl
Cytoband1q23.3
Allele length
AssemblyAllele length
hg385024737
hg195024184
Variant TypeOTHER inversion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4319424
Supporting Variants
Samples
Known GenesALDH9A1, ATF6, C1orf110, C1orf111, C1orf226, DDR2, DUSP12, FAM78B, FCGR2A, FCGR2B, FCGR2C, FCGR3A, FCGR3B, FCRLA, FCRLB, HSD17B7, HSPA6, HSPA7, LMX1A, LOC100422212, LOC100505795, LOC400794, LOC440700, LRRC52, MGST3, MIR3658, MIR4654, MIR556, MIR921, NOS1AP, NUF2, OLFML2B, PBX1, RGS4, RGS5, RPL31P11, RXRG, SH2D1B, TMCO1, UAP1, UCK2, UHMK1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv16090159
Frequency
Sample Size10847
Observed Gain0
Observed Loss0
Observed Complex0
Frequency0.000046


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer