A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv16086530



Internal ID19811800
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr9:99832383..99832384hg38UCSC Ensembl
chr9:102594665..102594666hg19UCSC Ensembl
Cytoband9q22.33
Allele length
AssemblyAllele length
hg38131
hg19131
Variant TypeCNV alu insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4480572
Supporting Variants
Samples
Known GenesNR4A3
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv16086530
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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