A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv16064523



Internal ID19789777
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr5:138572247..138572248hg38UCSC Ensembl
chr5:137907936..137907937hg19UCSC Ensembl
Cytoband5q31.2
Allele length
AssemblyAllele length
hg381240
hg191240
Variant TypeCNV sva insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4557546
Supporting Variants
Samples
Known GenesHSPA9
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv16064523
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.016232


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