A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv16054999



Internal ID19780253
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr4:55863782..55863783hg38UCSC Ensembl
chr4:56729948..56729949hg19UCSC Ensembl
Cytoband4q12
Allele length
AssemblyAllele length
hg385994
hg195994
Variant TypeCNV line1 insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4565069
Supporting Variants
Samples
Known GenesEXOC1
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv16054999
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000092


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