A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv16048625



Internal ID19773879
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:136150084..136150085hg38UCSC Ensembl
chr3:135868926..135868927hg19UCSC Ensembl
Cytoband3q22.3
Allele length
AssemblyAllele length
hg3891
hg1991
Variant TypeCNV alu insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv4468392
Supporting Variants
Samples
Known GenesMSL2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nssv16048625
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequency0.000046


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